19382 mass finder5/28/2023 ![]() This removes the residual precursor ion, which is frequently observed in MS/MS spectra acquired on qTOFs.įilter out peaks that are not top 6 most intense peaks in a +/- 50Da window Reduce to 0 if your data's raw intensities are very low.Īll peaks in a +/- 17 Da around precursor ion mass are deleted. Maximum mass shift between library and putative analog foundĪll fragment ions in the MS/MS spectrum below this raw intensity will be deleted. Will search data for analogs to library spectra Number of results to return per query spectrum ![]() Minimum Library Class to Consider in Search The peaks input requires a peak per line with mass followed my intensity, separated by a space or a tab. The query parameters are similar library search, however, users are required to enter the precursor m/z and peaks. In analyzing your molecular networks, you can click the "Search Spec" button on the View ALL Clusters With IDs link to pre-populate parent mass and peaks. MASST Web Interface ¶Ĭlick here for the standalone MASST search interface, to get this start page:įrom the main GNPS page, click the "Query Spectrum" button. To search a single spectrum to see where it occurs in all public GNPS datasets, there are three ways to populate the search. The mass spectrometry equivalent of NCBI BLAST helps to put the query spectrum in context of where else it occurs (including sample information) as well as search a single MS/MS spectrum against all public spectral libraries. Query a single MS/MS spectrum across all public GNPS datasets. Molecular Networking - Analog Discovery in Microbial Extractsįeature-Based Molecular Networking (FBMN) with MZmine2 - Microbiome Molecules in Fecal Samples in American Gut ProjectįBMN with MS-DIAL - Microbiome Molecules in Fecal Samples in American Gut Project Open-source Method for Reference Library Generationĭata Acqusition - Thermo QExactive (v1.0) Reference Spectral Library mzVault Addition Reference Spectral Library Batch Addition MS2LDA and MotifDB Substructure DiscoveryĪdd/Curate Reference Spectrum in the Library GC-MS Library Search and Molecular Networking
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